The crystal structure of Aminopeptidase N in complex with N-benzyl-1,2-diaminoethylphosphonic acid
Nocek, B., Joachimiak, A., Vassiliou, S., Berlicki, L., Mucha, A., Midwest Center for Structural Genomics (MCSG)To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Aminopeptidase N | 867 | Neisseria meningitidis MC58 | Mutation(s): 0  Gene Names: pepN, NMB1416 EC: 3.4.11.2 | ||
UniProt | |||||
Find proteins for Q9JYV4 (Neisseria meningitidis serogroup B (strain MC58)) Explore Q9JYV4  Go to UniProtKB:  Q9JYV4 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9JYV4 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 5 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
5HR Query on 5HR | M [auth A] | [(1R)-1-amino-2-(benzylamino)ethyl]phosphonic acid C9 H15 N2 O3 P TYSJLDXCWVWYDI-SECBINFHSA-N | |||
SO4 Query on SO4 | C [auth A] D [auth A] E [auth A] F [auth A] G [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L | |||
GOL Query on GOL | N [auth A], O [auth A], P [auth A], Q [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N | |||
IMD Query on IMD | R [auth A] | IMIDAZOLE C3 H5 N2 RAXXELZNTBOGNW-UHFFFAOYSA-O | |||
ZN Query on ZN | B [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
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a = 224.644 | α = 90 |
b = 224.644 | β = 90 |
c = 57.938 | γ = 120 |
Software Name | Purpose |
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PHENIX | refinement |
HKL-3000 | data reduction |
HKL-3000 | data scaling |
MOLREP | phasing |