5C4O

Identification of a Novel Allosteric Binding Site for RORgt Inhibitors


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.226

Literature

Macromolecules
Sequence Display for 5C4O

Classification: TRANSCRIPTION / TRANSCRIPTION INHIBITOR

Total Structure Weight: 29093.90

Macromolecule Entities
Molecule Chains Length Organism Details
Nuclear receptor ROR-gamma A 241 Homo sapiens Fragment: Ligand-binding residues 267-507
Mutation: C455H
Gene Name(s): RORC Gene View NR1F3 RORG RZRG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4F1
Query on 4F1

A 4-{1-[2-chloro-6-(trifluoromethyl)benzoyl]- 1H-indazol-3-yl}benzoic acid
C22 H12 Cl F3 N2 O3
DANLZOIRUUHIIX-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.24 Å
  • R-Value Free: 0.251
  • R-Value Work: 0.226
  • Space Group: P 61 2 2

Unit Cell:

Length (Å) Angle (°)
a = 108.49 α = 90.00
b = 108.49 β = 90.00
c = 104.66 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-18
  • Released Date: 2015-12-16
  • Deposition author(s): Parthasarathy, G., Soisson, S.

Revision History

  • Version 1_0: 2015-12-16

    Type: Initial release