5B01

Structure of a prenyltransferase in its unbound form

• PDB DOI: https://doi.org/10.2210/pdb5B01/pdb

• Classification: TRANSFERASE
• Organism(s): Streptomyces viridosporus
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2015-10-27 Released: 2016-11-02 
• Deposition Author(s): Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 3.45 Å
• R-Value Free: 0.261 
• R-Value Work: 0.225 

Literature

Structure and function of a prenyltransferase

Zhang, L., Chen, C.-C., Ko, T.-P., Guo, R.-T., Oldfield, E.O.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly 2  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 2 assigned by authors and generated by PISA (software)

Biological Assembly 3  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 3 assigned by authors and generated by PISA (software)

Biological Assembly 4  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 4 assigned by authors and generated by PISA (software)

Biological Assembly 5  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 5 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 322.58 kDa 
• Atom Count: 20,030 
• Modelled Residue Count: 2,620 
• Deposited Residue Count: 2,940 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
MoeN5	A, B, C, D, E, F, G, H, I, J	294	Streptomyces viridosporus	Mutation(s): 0  Gene Names: moeN5
UniProt
Find proteins for A0A010 (Streptomyces viridosporus) Explore A0A010  Go to UniProtKB:  A0A010

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 3.45 Å
• R-Value Free: 0.261 
• R-Value Work: 0.225 
• Space Group: P 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 106.604	α = 90
b = 106.604	β = 90
c = 310.713	γ = 90

Software Package:

Software Name	Purpose
CNS	refinement
HKL-2000	data reduction
HKL-2000	data scaling
CNS	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2016-11-02 
Deposition Author(s): Ko, T.-P., Zhang, L., Chen, C.-C., Guo, R.-T.

Revision History  

• Version 1.0: 2016-11-02
  Type: Initial release
  
• Version 1.1: 2023-11-08
  Changes: Data collection, Database references, Derived calculations, Refinement description