Download MendeleyCrystal structure of HyHEL-10 Fv
Nakanishi, T., Tsumoto, K., Yokota, A., Kondo, H., Kumagai, I.To be published.
5AYU
Crystal structure of HyHEL-10 Fv
- PDB DOI: https://doi.org/10.2210/pdb5AYU/pdb
- Classification: IMMUNE SYSTEM
- Organism(s): Mus musculus
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2015-09-04 Released: 2016-09-07
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.234
- R-Value Work: 0.191
- R-Value Observed: 0.193
wwPDB Validation 3D Report Full Report
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| lysozyme binding Ig kappa chain V23-J2 region | A [auth L] | 107 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
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Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Ig VH,anti-lysozyme | B [auth H] | 113 | Mus musculus | Mutation(s): 0 |  |
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| GOL Query on GOL | C [auth L], D [auth H], E [auth H], F [auth H] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.80 Å
- R-Value Free: 0.234
- R-Value Work: 0.191
- R-Value Observed: 0.193
- Space Group: P 31 2 1
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 65.822 | α = 90 |
| b = 65.822 | β = 90 |
| c = 96.321 | γ = 120 |
| Software Name | Purpose |
|---|---|
| REFMAC | refinement |
| HKL-2000 | data collection |
| MOLREP | phasing |
| DENZO | data reduction |
| SCALEPACK | data scaling |
Entry History
Deposition Data
- Released Date: 2016-09-07 Deposition Author(s): Nakanishi, T., Tsumoto, K., Yokota, A., Kondo, H., Kumagai, I.
Revision History (Full details and data files)
- Version 1.0: 2016-09-07
Type: Initial release - Version 1.1: 2020-02-26
Changes: Data collection, Database references, Derived calculations - Version 1.2: 2023-11-08
Changes: Data collection, Database references, Refinement description
