5XDP

K11/48-branched teraubiquitin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.234

Literature

Macromolecules
Sequence Display for 5XDP

Classification: PROTEIN BINDING

Total Structure Weight: 17128.57

Macromolecule Entities
Molecule Chains Length Organism Details
ubiquitin-B A 76 Homo sapiens Details: K11/48-branched teraubiquitin
Gene Name(s): UBB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Modified Residues 17 Unique
ID Chains Type Formula 2D Diagram Parent
DNE
Query on DNE
B D-PEPTIDE LINKING C6 H13 N O2 --
DGN
Query on DGN
B D-PEPTIDE LINKING C5 H10 N2 O3 --
DIL
Query on DIL
B D-PEPTIDE LINKING C6 H13 N O2 --
DPN
Query on DPN
B D-PEPTIDE LINKING C9 H11 N O2 --
DVA
Query on DVA
B D-PEPTIDE LINKING C5 H11 N O2 --
DLY
Query on DLY
B D-PEPTIDE LINKING C6 H14 N2 O2 --
DTH
Query on DTH
B D-PEPTIDE LINKING C4 H9 N O3 --
DLE
Query on DLE
B D-PEPTIDE LINKING C6 H13 N O2 --
DGL
Query on DGL
B D-PEPTIDE LINKING C5 H9 N O4 --
DPR
Query on DPR
B D-PEPTIDE LINKING C5 H9 N O2 --
DSN
Query on DSN
B D-PEPTIDE LINKING C3 H7 N O3 --
DAS
Query on DAS
B D-PEPTIDE LINKING C4 H7 N O4 --
DSG
Query on DSG
B D-PEPTIDE LINKING C4 H8 N2 O3 --
DAL
Query on DAL
B D-PEPTIDE LINKING C3 H7 N O2 --
DAR
Query on DAR
B D-PEPTIDE LINKING C6 H15 N4 O2 --
DTY
Query on DTY
B D-PEPTIDE LINKING C9 H11 N O3 --
DHI
Query on DHI
B D-PEPTIDE LINKING C6 H10 N3 O2 --

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.38 Å
  • R-Value Free: 0.271
  • R-Value Work: 0.234
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 25.94 α = 103.03
b = 26.16 β = 94.16
c = 46.54 γ = 99.65

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-28
  • Released Date: 2017-04-19
  • Deposition author(s): Liang, L., Gao, S., Tang, S.

Revision History

  • Version 1_0: 2017-04-19

    Type: Initial release