5VTL

Structure of metacyclic invariant surface protein , Tb427.07.360, from Trypanosoma brucei.

• PDB DOI: https://doi.org/10.2210/pdb5VTL/pdb

• Classification: UNKNOWN FUNCTION
• Organism(s): Trypanosoma brucei
• Expression System: Escherichia coli
• Mutation(s): No 


• Deposited: 2017-05-17 Released: 2018-08-08 
• Deposition Author(s): Ramswamy, R., Workman, S.D., Boulanger, M.J.
• Funding Organization(s): Natural Sciences and Engineering Research Council (NSERC, Canada)

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.82 Å
• R-Value Free: 0.204 
• R-Value Work: 0.169 
• R-Value Observed: 0.171 

Literature

Structure of Tb427.07.360, an insect stage antigen from Trypanosoma brucei.

Ramswamy, R., Workman, S.D., Boulanger, M.J.

To be published.

Biological Assembly 1  

Global Symmetry: Asymmetric - C1 
Global Stoichiometry: Monomer - A1 

Biological assembly 1 assigned by authors and generated by PISA (software)

Biological Assembly Evidence: gel filtration

Macromolecule Content

• Total Structure Weight: 22.09 kDa 
• Atom Count: 1,819 
• Modelled Residue Count: 210 
• Deposited Residue Count: 210 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Tb427.07.360- putative uncharacterized metacyclic invariant surface protein from Trypanosoma brucei	A	210	Trypanosoma brucei	Mutation(s): 0
UniProt
Find proteins for A0A3F2YLN4 (Trypanosoma brucei) Explore A0A3F2YLN4  Go to UniProtKB:  A0A3F2YLN4

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.82 Å
• R-Value Free: 0.204 
• R-Value Work: 0.169 
• R-Value Observed: 0.171 
• Space Group: P 2₁ 2₁ 2₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 24.81	α = 90
b = 79.5	β = 90
c = 108.17	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
PDB_EXTRACT	data extraction
iMOSFLM	data reduction
SCALA	data scaling
PHASER	phasing

Structure Validation

Entry History & Funding Information

Deposition Data

• Released Date: 2018-08-08 
Deposition Author(s): Ramswamy, R., Workman, S.D., Boulanger, M.J.

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Funding Organization	Location	Grant Number
Natural Sciences and Engineering Research Council (NSERC, Canada)	Canada	--

Revision History  

• Version 1.0: 2018-08-08
  Type: Initial release
  
• Version 1.1: 2020-01-08
  Changes: Author supporting evidence
• Version 1.2: 2023-10-04
  Changes: Data collection, Database references, Refinement description