5UDC

Crystal Structure of RSV F A2 Bound to MEDI8897


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.45 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.175

Literature

Macromolecules
Sequence Display for 5UDC

Classification: Viral Protein / Immune System

Total Structure Weight: 334238.53

Macromolecule Entities
Molecule Chains Length Organism Details
MEDI8897 Fab Heavy Chain B, E, H 228 Homo sapiens
MEDI8897 Fab Light Chain C, G, L 214 Homo sapiens
Fusion glycoprotein F0 A, D, F 568 Human orthopneumovirus Mutation: P102A, S155C, S190F, V207L, S290C, I379V, M447V
Gene Name(s): F
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

F N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

F ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

F BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A, F CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

Unit Cell:

Length (Å) Angle (°)
a = 103.78 α = 90.00
b = 126.31 β = 102.56
c = 162.31 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-12-26
  • Released Date: 2017-05-17
  • Deposition author(s): McLellan, J.S.

Revision History

  • Version 1_0: 2017-05-17

    Type: Initial release