5T3D

Crystal structure of holo-EntF a nonribosomal peptide synthetase in the thioester-forming conformation


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 5T3D

Classification: BIOSYNTHETIC PROTEIN

Total Structure Weight: 143087.03

Macromolecule Entities
Molecule Chains Length Organism Details
Enterobactin synthase component F A 1295 Escherichia coli EC#: 2.7.7 IUBMB
Gene Name(s): entF b0586 JW0578
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
75C
Query on 75C

A 5'-({[(2R,3S)-3-amino-4-hydroxy-2-{[2-({N- [(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]- beta-alanyl}amino)ethyl]sulfanyl}butyl]sulfonyl}amino)- 5'-deoxyadenosine
C25 H44 N9 O13 P S2
ISNNGRBZFMWGAL-DROAMXOMSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.8 Å
  • R-Value Free: 0.232
  • R-Value Work: 0.185
  • Space Group: P 41 21 2

Unit Cell:

Length (Å) Angle (°)
a = 127.71 α = 90.00
b = 127.71 β = 90.00
c = 186.94 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-08-25
  • Released Date: 2016-09-21
  • Deposition author(s): Miller, B.R., Drake, E.J., Sundlov, J.A., Gulick, A.M.
  • This entry supercedes: 4ZXJ

Revision History

  • Version 1_0: 2016-09-21

    Type: Initial release

  • Version 1_1: 2017-09-13

    Type: Author supporting evidence, Derived calculations