5O5J

Structure of the 30S small ribosomal subunit from Mycobacterium smegmatis


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.45 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5O5J

Classification: RIBOSOME

Total Structure Weight: 816244.25


Macromolecule Entities
Molecule Chains Length Organism Details
Conserved domain protein B 33 Mycobacterium smegmatis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S3 C 275 Mycobacterium smegmatis Gene Name(s): rpsC MSMEG_1442 MSMEI_1406
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S4 D 201 Mycobacterium smegmatis Gene Name(s): rpsD MSMEG_1523 MSMEI_1487
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S5 E 214 Mycobacterium smegmatis Gene Name(s): rpsE MSMEG_1472 MSMEI_1436
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S6 F 96 Mycobacterium smegmatis Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S7 G 156 Mycobacterium smegmatis Gene Name(s): rpsG MSMEG_1399 MSMEI_1361
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S8 H 132 Mycobacterium smegmatis Gene Name(s): rpsH MSMEG_1469 MSMEI_1433
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S9 I 150 Mycobacterium smegmatis Gene Name(s): rpsI MSMEG_1557 MSMEI_1520
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S10 J 101 Mycobacterium smegmatis Gene Name(s): rpsJ MSMEG_1435 MSMEI_1399
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S11 K 138 Mycobacterium smegmatis Gene Name(s): rpsK MSMEG_1522 MSMEI_1486
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S12 L 124 Mycobacterium smegmatis Gene Name(s): rpsL MSMEG_1398 MSMEI_1360
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S13 M 124 Mycobacterium smegmatis Gene Name(s): rpsM MSMEG_1521 MSMEI_1485
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S14 type Z N 61 Mycobacterium smegmatis Gene Name(s): rpsZ rpsN MSMEG_1468 MSMEI_1432
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S15 O 89 Mycobacterium smegmatis Gene Name(s): rpsO MSMEG_2654 MSMEI_2591
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S16 P 156 Mycobacterium smegmatis Gene Name(s): rpsP MSMEG_2435 MSMEI_2374
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S17 Q 98 Mycobacterium smegmatis Gene Name(s): rpsQ MSMEG_1445 MSMEI_1409
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S18 2 R 84 Mycobacterium smegmatis Gene Name(s): rpsR2 rpsR1 MSMEG_6895 MSMEI_6711
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S19 S 93 Mycobacterium smegmatis Gene Name(s): rpsS MSMEG_1440 MSMEI_1404
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S20 T 86 Mycobacterium smegmatis Gene Name(s): rpsT MSMEG_4571 MSMEI_4459
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
30S ribosomal protein S2 V 277 Mycobacterium smegmatis Gene Name(s): rpsB MSMEG_2519 MSMEI_2460
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
50S ribosomal protein L31 g 75 Mycobacterium smegmatis Gene Name(s): rpmE MSMEG_4951 MSMEI_4823
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Macromolecule Entities
Molecule Chains Length Organism Details
16S rRNA A 1528 Mycobacterium smegmatis
tRNA-Phe anticodon stem W 19 Mycobacterium smegmatis
mRNA fragment X 6 Mycobacterium smegmatis

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

N, R ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, F, R MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 3.45 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-06-02
  • Released Date: 2017-07-12
  • Deposition author(s): Hentschel, J., Burnside, C., Mignot, I., Leibundgut, M., Boehringer, D., Ban, N.

Revision History

  • Version 1_0: 2017-07-12

    Type: Initial release

  • Version 1_1: 2017-07-19

    Type: Database references