5NY0

L. reuters 100-23 SRRP


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.225 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structural basis for the role of serine-rich repeat proteins from Lactobacillus reuteriin gut microbe-host interactions.

Sequeira, S.Kavanaugh, D.MacKenzie, D.A.Suligoj, T.Walpole, S.Leclaire, C.Gunning, A.P.Latousakis, D.Willats, W.G.T.Angulo, J.Dong, C.Juge, N.

(2018) Proc Natl Acad Sci U S A 115: E2706-E2715

  • DOI: https://doi.org/10.1073/pnas.1715016115
  • Primary Citation of Related Structures:  
    5NXK, 5NY0

  • PubMed Abstract: 

    Lactobacillus reuteri , a Gram-positive bacterial species inhabiting the gastrointestinal tract of vertebrates, displays remarkable host adaptation. Previous mutational analyses of rodent strain L. reuteri 100-23C identified a gene encoding a predicted surface-exposed serine-rich repeat protein (SRRP 100-23 ) that was vital for L. reuteri biofilm formation in mice. SRRPs have emerged as an important group of surface proteins on many pathogens, but no structural information is available in commensal bacteria. Here we report the 2.00-Å and 1.92-Å crystal structures of the binding regions (BRs) of SRRP 100-23 and SRRP 53608 from L. reuteri ATCC 53608, revealing a unique β-solenoid fold in this important adhesin family. SRRP 53608 -BR bound to host epithelial cells and DNA at neutral pH and recognized polygalacturonic acid (PGA), rhamnogalacturonan I, or chondroitin sulfate A at acidic pH. Mutagenesis confirmed the role of the BR putative binding site in the interaction of SRRP 53608 -BR with PGA. Long molecular dynamics simulations showed that SRRP 53608 -BR undergoes a pH-dependent conformational change. Together, these findings provide mechanistic insights into the role of SRRPs in host-microbe interactions and open avenues of research into the use of biofilm-forming probiotics against clinically important pathogens.


  • Organizational Affiliation

    BioMedical Research Centre, University of East Anglia, NR4 7TJ Norwich, United Kingdom.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
L. reuteris SRRP binding region368Limosilactobacillus reuteri subsp. rodentiumMutation(s): 0 
Gene Names: srrp
UniProt
Find proteins for A0A384E0N5 (Limosilactobacillus reuteri subsp. rodentium (strain DSM 17509 / CIP 109821 / 100-23))
Explore A0A384E0N5 
Go to UniProtKB:  A0A384E0N5
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A384E0N5
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.00 Å
  • R-Value Free: 0.244 
  • R-Value Work: 0.224 
  • R-Value Observed: 0.225 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 162.356α = 90
b = 162.356β = 90
c = 146.777γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
PDB_EXTRACTdata extraction
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Wellcome TrustUnited Kingdom--

Revision History  (Full details and data files)

  • Version 1.0: 2018-03-21
    Type: Initial release
  • Version 1.1: 2018-03-28
    Changes: Data collection, Database references
  • Version 1.2: 2024-01-17
    Changes: Advisory, Data collection, Database references, Refinement description