5NET

Localised Reconstruction of Integrin alpha v beta 6 bound to Foot and Mouth Disease Virus O1 Manisa - Pose A.


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.6 Å
  • Aggregation State: Particle
  • Reconstruction Method: Single Particle

Literature

Macromolecules
Sequence Display for 5NET

Classification: VIRUS

Total Structure Weight: 201450.58

Macromolecule Entities
Molecule Chains Length Organism Details
O1 Manisa VP1 1 208 Foot-and-mouth disease virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
O1 Manisa VP2 2 218 Foot-and-mouth disease virus Mutation: S93Y
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
O1 Manisa VP3 3 220 Foot-and-mouth disease virus Mutation: H56R, A168T
Gene Name(s):
O1 Manisa VP4 4 85 Foot-and-mouth disease virus Gene Name(s):
Integrin alpha-V A 594 Homo sapiens Mutation: M400C
Gene Name(s): ITGAV Gene View MSK8 VNRA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Integrin beta-6 B 470 Homo sapiens Mutation: I267C, H449N
Gene Name(s): ITGB6 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

3, A ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CA
Query on CA

A CALCIUM ION
Ca
BHPQYMZQTOCNFJ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 8.6 Å
  • Reconstruction Method: Single Particle

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-03-11
  • Released Date: 2017-06-21
  • Deposition author(s): Kotecha, A., Stuart, D.

Revision History

  • Version 1_0: 2017-06-21

    Type: Initial release

  • Version 1_1: 2017-08-30

    Type: Author supporting evidence, Data collection, Experimental preparation, Refinement description

  • Version 1_2: 2017-10-04

    Type: Structure summary