5MYO

Structure of Pyroglutamate-Abeta-specific Fab c#6 in complex with human Abeta-pE3-12-PEGb


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.178

Literature

Macromolecules
Sequence Display for 5MYO

Classification: IMMUNE SYSTEM

Total Structure Weight: 99304.47

Macromolecule Entities
Molecule Chains Length Organism Details
Fab c#6 light chain A, C 219 Mus musculus
Fab c#6 heavy chain B, D 228 Mus musculus
Amyloid beta A4 protein E 10 Homo sapiens Fragment: UNP residues 674-683
Gene Name(s): APP Gene View A4 AD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

A SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, B, C GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
E L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.59 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.178
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 53.77 α = 62.87
b = 65.96 β = 82.93
c = 67.76 γ = 84.11

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2017-01-27
  • Released Date: 2017-06-28
  • Deposition author(s): Parthier, C., Piechotta, A., Stubbs, M.T.

Revision History

  • 2017-08-09
    Type: Database references