Structural implication of activity loss by D456A mutant of the nicking endonuclease Nt.BspD6I.
Kachalova, G.S., Yunusova, A.K., Popov, A.N., Artyukh, R.I., Perevyazova, T.A., Bartunik, H.D., Zheleznaya, L.A.To be published.
Experimental Data Snapshot
Starting Model: experimental
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wwPDB Validation   3D Report Full Report
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Nicking endonuclease N.BspD6I | 610 | Bacillus sp. (in: firmicutes) | Mutation(s): 1  | ||
UniProt | |||||
Find proteins for Q8GCA3 (Bacillus sp) Explore Q8GCA3  Go to UniProtKB:  Q8GCA3 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q8GCA3 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
PO4 Query on PO4 | D [auth A], E [auth A], I [auth B], J [auth B] | PHOSPHATE ION O4 P NBIIXXVUZAFLBC-UHFFFAOYSA-K | |||
GOL Query on GOL | C [auth A], F [auth B], G [auth B], H [auth B] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 76.35 | α = 90 |
b = 92.666 | β = 105.75 |
c = 113.969 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
MOSFLM | data reduction |
SCALA | data scaling |
MOLREP | phasing |