5L9D

AFAMIN ANTIBODY FRAGMENT, N14 FAB, L1- GLYCOSYLATED, CRYSTAL FORM I, parsimonious model


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.176

Literature

Macromolecules
Sequence Display for 5L9D

Classification: IMMUNE SYSTEM

Total Structure Weight: 48832.32

Macromolecule Entities
Molecule Chains Length Organism Details
MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA HEAVY CHAIN H 220 Mus musculus
MOUSE ANTIBODY FAB FRAGMENT, IGG1-KAPPA LIGHT CHAIN L 215 Mus musculus

Small Molecules
Ligands 6 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PE8
Query on PE8

H 3,6,9,12,15,18,21-HEPTAOXATRICOSANE-1,23- DIOL
C16 H34 O9
GLZWNFNQMJAZGY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
NAG
Query on NAG

L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PG4
Query on PG4

H TETRAETHYLENE GLYCOL
C8 H18 O5
UWHCKJMYHZGTIT-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PGE
Query on PGE

H TRIETHYLENE GLYCOL
C6 H14 O4
ZIBGPFATKBEMQZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
PEG
Query on PEG

H, L DI(HYDROXYETHYL)ETHER
C4 H10 O3
MTHSVFCYNBDYFN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
K
Query on K

H POTASSIUM ION
K
NPYPAHLBTDXSSS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.88 Å
  • R-Value Free: 0.215
  • R-Value Work: 0.176
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 67.78 α = 90.00
b = 69.25 β = 90.00
c = 87.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-10
  • Released Date: 2016-08-03
  • Deposition author(s): Rupp, B., Naschberger, A.

Revision History

  • 2016-11-16
    Type: Data collection
  • 2016-12-07
    Type: Database references
  • 2016-12-21
    Type: Database references
  • 2017-09-06
    Type: Author supporting evidence