5KET

Structure of the aldo-keto reductase from Coptotermes gestroi


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.242 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 1.6 of the entry. See complete history


Literature

The Coptotermes gestroi aldo-keto reductase: a multipurpose enzyme for biorefinery applications.

Tramontina, R.Franco Cairo, J.P.Liberato, M.V.Mandelli, F.Sousa, A.Santos, S.Rabelo, S.C.Campos, B.Ienczak, J.Ruller, R.Damasio, A.R.Squina, F.M.

(2017) Biotechnol Biofuels 10: 4-4

  • DOI: https://doi.org/10.1186/s13068-016-0688-6
  • Primary Citation of Related Structures:  
    5KET

  • PubMed Abstract: 

    In nature, termites can be considered as a model biological system for biofuel research based on their remarkable efficiency for lignocellulosic biomass conversion. Redox enzymes are of interest in second-generation ethanol production because they promote synergic enzymatic activity with classical hydrolases for lignocellulose saccharification and inactivate fermentation inhibitory compounds produced after lignocellulose pretreatment steps. In the present study, the biochemical and structural characteristics of the Coptotermes gestroi aldo-keto reductase ( Cg AKR-1) were comprehensively investigated. Cg AKR-1 displayed major structural differences compared with others AKRs, including the differences in the amino acid composition of the substrate-binding site, providing basis for classification as a founding member of a new AKR subfamily (family AKR1 I). Immunolocalization assays with anti- Cg AKR-1 antibodies resulted in strong fluorescence in the salivary gland, proventriculus, and foregut. Cg AKR-1 supplementation caused a 32% reduction in phenolic aldehydes, such as furfural, which act as fermentation inhibitors of hemicellulosic hydrolysates, and improved ethanol fermentation by the xylose-fermenting yeast Scheffersomyces stipitis by 45%. We observed synergistic enzymatic interactions between Cg AKR-1 and commercial cellulosic cocktail for sugarcane bagasse saccharification, with a maximum synergism degree of 2.17 for sugar release. Our data indicated that additive enzymatic activity could be mediated by reactive oxygen species because Cg AKR-1 could produce hydrogen peroxide. In summary, we identified the founding member of an AKRI subfamily with a potential role in the termite digestome. Cg AKR-1 was found to be a multipurpose enzyme with potential biotechnological applications. The present work provided a basis for the development and application of integrative and multipurpose enzymes in the bioethanol production chain.


  • Organizational Affiliation

    Laboratório Nacional de Ciência e Tecnologia do Bioetanol (CTBE), Centro Nacional de Pesquisa em Energia e Materiais (CNPEM), Rua Giuseppe Máximo Scolfaro, no 10000 Campinas, SP Brazil ; Programa de Pós Graduação em Biociências e Tecnologia de Produtos Bioativos (BTPB)-Instituto de Biologia-CP 6109, Universidade Estadual de Campinas-UNICAMP, 13083-970 Campinas, SP Brazil.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Aldo-keto reductase 1
A, B
340Coptotermes gestroiMutation(s): 0 
UniProt
Find proteins for A0A140CVV2 (Coptotermes gestroi)
Explore A0A140CVV2 
Go to UniProtKB:  A0A140CVV2
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupA0A140CVV2
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 1 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
NAP
Query on NAP

Download Ideal Coordinates CCD File 
C [auth A],
D [auth B]
NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
C21 H28 N7 O17 P3
XJLXINKUBYWONI-NNYOXOHSSA-N
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.85 Å
  • R-Value Free: 0.293 
  • R-Value Work: 0.239 
  • R-Value Observed: 0.242 
  • Space Group: H 3 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 131.141α = 90
b = 131.141β = 90
c = 290.657γ = 120
Software Package:
Software NamePurpose
PHENIXrefinement
Aimlessdata scaling
PHASERphasing
PDB_EXTRACTdata extraction
XDSdata scaling

Structure Validation

View Full Validation Report



Ligand Structure Quality Assessment 


Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
Sao Paulo Research Foundation (FAPESP)Brazil2014/04105-4
Sao Paulo Research Foundation (FAPESP)Brazil2014/50371-8
Sao Paulo Research Foundation (FAPESP)Brazil2014/20576-7
Sao Paulo Research Foundation (FAPESP)Brazil2013/06336-0

Revision History  (Full details and data files)

  • Version 1.0: 2017-01-18
    Type: Initial release
  • Version 1.1: 2017-11-22
    Changes: Database references, Refinement description
  • Version 1.2: 2018-01-17
    Changes: Author supporting evidence
  • Version 1.3: 2018-01-31
    Changes: Data collection
  • Version 1.4: 2019-04-17
    Changes: Author supporting evidence, Data collection
  • Version 1.5: 2020-01-01
    Changes: Author supporting evidence
  • Version 1.6: 2023-09-27
    Changes: Data collection, Database references, Refinement description