5K9O

Crystal structure of multidonor HV1-18+HD3-9 class broadly neutralizing Influenza A antibody 31.b.09 in complex with Hemagglutinin H1 A/California/04/2009


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.39 Å
  • R-Value Free: 0.346
  • R-Value Work: 0.291

Literature

Macromolecules
Sequence Display for 5K9O

Classification: IMMUNE SYSTEM

Total Structure Weight: 210849.41

Macromolecule Entities
Molecule Chains Length Organism Details
31.b.09 Heavy Fv A, H 227 Homo sapiens
31.b.09 Light Fv B, L 219 Homo sapiens
Hemagglutinin F, I 505 Influenza a virus Gene Name(s): HA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

I N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

I BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.39 Å
  • R-Value Free: 0.346
  • R-Value Work: 0.291
  • Space Group: P 6 2 2

Unit Cell:

Length (Å) Angle (°)
a = 208.65 α = 90.00
b = 208.65 β = 90.00
c = 252.03 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-01
  • Released Date: 2016-12-28
  • Deposition author(s): Joyce, M.G., Thomas, P.V., Wheatley, A.K., McDermott, A.B., Mascola, J.R., Kwong, P.D.

Revision History

  • Version 1_0: 2016-12-28

    Type: Initial release

  • Version 1_1: 2017-05-24

    Type: Structure summary