5K8L

Apo structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 5K8L

Classification: HYDROLASE

Total Structure Weight: 52186.47

Macromolecule Entities
Molecule Chains Length Organism Details
ZIKV NS3 helicase A 458 Zika virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GSP
Query on GSP

A 5'-GUANOSINE-DIPHOSPHATE-MONOTHIOPHOSPHATE
C10 H16 N5 O13 P3 S
XOFLBQFBSOEHOG-UUOKFMHZSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MPD
Query on MPD

A (4S)-2-METHYL-2,4-PENTANEDIOL
C6 H14 O2
SVTBMSDMJJWYQN-YFKPBYRVSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.75 Å
  • R-Value Free: 0.240
  • R-Value Work: 0.186
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 64.86 α = 90.00
b = 51.75 β = 105.77
c = 66.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-30
  • Released Date: 2016-11-09
  • Deposition author(s): Cao, X., Li, Y., Jin, T.

Revision History

  • Version 1_0: 2016-11-09

    Type: Initial release

  • Version 1_1: 2017-12-06

    Type: Database references, Derived calculations