5K8I

Apo structure


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 5K8I

Classification: HYDROLASE

Total Structure Weight: 52084.04

Macromolecule Entities
Molecule Chains Length Organism Details
ZIKV NS3 helicase A 458 Zika virus Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MN
Query on MN

A MANGANESE (II) ION
Mn
WAEMQWOKJMHJLA-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
CL
Query on CL

A CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.69 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.179
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 63.51 α = 90.00
b = 53.17 β = 105.31
c = 65.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-30
  • Released Date: 2016-11-09
  • Deposition author(s): Cao, X., Li, Y., Jin, T.

Revision History

  • Version 1_0: 2016-11-09

    Type: Initial release

  • Version 1_1: 2017-10-04

    Type: Data collection, Database references, Derived calculations

  • Version 1_2: 2017-10-11

    Type: Data collection