5JXE

Human PD-1 ectodomain complexed with Pembrolizumab Fab


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.261

Literature

Macromolecules
Sequence Display for 5JXE

Classification: IMMUNE SYSTEM

Total Structure Weight: 120328.12

Macromolecule Entities
Molecule Chains Length Organism Details
Programmed cell death protein 1 A, B 114 Homo sapiens Fragment: UNP RESIDUES 34-146
Mutation: C93S
Gene Name(s): PDCD1 Gene View PD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Pembrolizumab Fab light chain C, F 218 Homo sapiens
Pembrolizumab Fab heavy chain D, G 218 Homo sapiens


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.9 Å
  • R-Value Free: 0.286
  • R-Value Work: 0.261
  • Space Group: P 65 2 2

Unit Cell:

Length (Å) Angle (°)
a = 105.55 α = 90.00
b = 105.55 β = 90.00
c = 380.05 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-05-13
  • Released Date: 2016-08-10
  • Deposition author(s): Na, Z., Bharath, S.R., Song, H.

Revision History

  • Version 1_0: 2016-08-10

    Type: Initial release

  • Version 1_1: 2016-09-07

    Type: Experimental preparation