5JNS

Crystal structure of human low molecular weight protein tyrosine phosphatase (LMPTP) type A complexed with phosphate


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.165

Literature

Macromolecules
Sequence Display for 5JNS

Classification: HYDROLASE

Total Structure Weight: 18382.74

Macromolecule Entities
Molecule Chains Length Organism Details
Low molecular weight phosphotyrosine protein phosphatase A 160 Homo sapiens EC#: 3.1.3.48 IUBMB
Gene Name(s): ACP1 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
PO4
Query on PO4

A PHOSPHATE ION
O4 P
NBIIXXVUZAFLBC-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

A DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.207
  • R-Value Work: 0.165
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 32.21 α = 90.00
b = 55.09 β = 90.00
c = 95.20 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-30
  • Released Date: 2017-03-29
  • Deposition author(s): Stanford, S.M., Aleshin, A.E., Liddington, R.C., Bankston, L., Cadwell, G., Bottini, N.

Revision History

  • Version 1_0: 2017-03-29

    Type: Initial release

  • Version 1_1: 2017-04-12

    Type: Database references

  • Version 1_2: 2017-05-24

    Type: Database references

  • Version 1_3: 2017-09-20

    Type: Author supporting evidence