5JM8

The structure of ATP-bound aerobactin synthetase IucA from a hypervirulent pathotype of Klebsiella pneumoniae


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.214

Literature

Macromolecules
Sequence Display for 5JM8

Classification: LIGASE

Total Structure Weight: 525625.69

Macromolecule Entities
Molecule Chains Length Organism Details
Aerobactin synthase IucA A, B, C..., D, E, F, G, HA, B, C, D, E, F, G, H 576 Klebsiella pneumoniae Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ATP
Query on ATP

A, B, C, D, E, F, G, H ADENOSINE-5'-TRIPHOSPHATE
C10 H16 N5 O13 P3
ZKHQWZAMYRWXGA-KQYNXXCUSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B, C, D, E, F, G, H MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.2 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.214
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 170.85 α = 90.00
b = 96.63 β = 90.02
c = 173.23 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-28
  • Released Date: 2016-06-15
  • Deposition author(s): Bailey, D.C., Drake, E.J., Gulick, A.M.

Revision History

  • Version 1_0: 2016-06-15

    Type: Initial release

  • Version 1_1: 2016-07-06

    Type: Database references

  • Version 1_2: 2017-09-20

    Type: Author supporting evidence, Database references, Derived calculations

  • Version 1_3: 2017-09-27

    Type: Author supporting evidence

  • Version 1_4: 2017-11-01

    Type: Author supporting evidence