5JIK

Crystal structure of HER2 binding IgG1-Fc (Fcab H10-03-6)


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.225

Literature

Macromolecules
Sequence Display for 5JIK

Classification: IMMUNE SYSTEM

Total Structure Weight: 53469.09

Macromolecule Entities
Molecule Chains Length Organism Details
Ig gamma-1 chain C region A, B 227 Homo sapiens Fragment: Hinge-CH2-CH3, UNP Residues 108-329
Mutation: L358Y, T359L, K360Y, N361G, Q362D, D413P, K414R, S415H, Q418A, Q419H
Gene Name(s): IGHG1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, B N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, B ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, B BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.82 Å
  • R-Value Free: 0.259
  • R-Value Work: 0.225
  • Space Group: P 21 21 21

Unit Cell:

Length (Å) Angle (°)
a = 49.74 α = 90.00
b = 79.81 β = 90.00
c = 140.87 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-22
  • Released Date: 2017-04-12
  • Deposition author(s): Humm, A., Lobner, E., Mlynek, G., Obinger, C., Djinovic-Carugo, K.

Revision History

  • 2017-05-31
    Type: Database references
  • 2017-06-14
    Type: Database references