5JG6

APC11-Ubv shows role of noncovalent RING-Ubiquitin interactions in processive multiubiquitination and Ubiquitin chain elongation by APC/C


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.185

Literature

Macromolecules
Sequence Display for 5JG6

Classification: CELL CYCLE

Total Structure Weight: 35004.73

Macromolecule Entities
Molecule Chains Length Organism Details
Anaphase-promoting complex subunit 11 A, D 70 Homo sapiens Gene Name(s): ANAPC11 Gene View HSPC214
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Polyubiquitin-B B, C 84 Homo sapiens Mutation: F4L, L8P, T9R, R42I, I44F, G47V, Q49R, E64K, T66S, H68L, V70A, L71M, L73V, R74P, G76K, Q78K
Gene Name(s): UBB Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
ZN
Query on ZN

A, D ZINC ION
Zn
PTFCDOFLOPIGGS-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.220
  • R-Value Work: 0.185
  • Space Group: C 1 2 1

Unit Cell:

Length (Å) Angle (°)
a = 131.07 α = 90.00
b = 35.19 β = 120.42
c = 72.77 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-04-19
  • Released Date: 2016-06-15
  • Deposition author(s): Brown, N.G., Zhang, W., Yu, S., Miller, D.J., Sidhu, S.S., Schulman, B.A.

Revision History

  • Version 1_0: 2016-06-15

    Type: Initial release

  • Version 1_1: 2017-09-06

    Type: Author supporting evidence, Derived calculations

  • Version 1_2: 2017-09-27

    Type: Author supporting evidence