Structure of wild-type glyceraldehyde dehydrogenase from Thermoplasma acidophilum in complex with NADP
Iermak, I., Mesters, J.R., Steffler, F., Sieber, V., Kuta Smatanova, I.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
D-glyceraldehyde dehydrogenase (NADP(+)) | 508 | Thermoplasma acidophilum | Mutation(s): 0  Gene Names: Ta0809 EC: 1.2.1.89 | ||
UniProt | |||||
Find proteins for Q9HK01 (Thermoplasma acidophilum (strain ATCC 25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)) Explore Q9HK01  Go to UniProtKB:  Q9HK01 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q9HK01 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 1 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
NAP Query on NAP | I [auth A] J [auth B] K [auth C] L [auth D] M [auth G] | NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE C21 H28 N7 O17 P3 XJLXINKUBYWONI-NNYOXOHSSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
CSD Query on CSD | A, B, C, D, E A, B, C, D, E, F, G, H | L-PEPTIDE LINKING | C3 H7 N O4 S | CYS |
Length ( Å ) | Angle ( ˚ ) |
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a = 95.289 | α = 90 |
b = 152.353 | β = 92.19 |
c = 149.905 | γ = 90 |
Software Name | Purpose |
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REFMAC | refinement |
XDS | data reduction |
BALBES | phasing |
XDS | data scaling |
Funding Organization | Location | Grant Number |
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Czech Academy of Sciences | Czech Republic | DAAD-16-09 |