5GIS

Crystal structure of a Fab fragment with its ligand peptide


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.186

Literature

Macromolecules
Sequence Display for 5GIS

Classification: IMMUNE SYSTEM

Total Structure Weight: 53764.98

Macromolecule Entities
Molecule Chains Length Organism Details
Heavy chain of Fab fragment H 240 Mus musculus
Light chain of Fab fragment L 234 Mus musculus
THR-LYS-PRO-ILE-THR-ILE-GLY-SER-HIS-ALA-HIS-GLY-ASP-GLN-TYR-LYS C 16 Homo sapiens EC#: 1.1.1.42 IUBMB
Gene Name(s): IDH2 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
SO4
Query on SO4

H, L SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
Modified Residues 1 Unique
ID Chains Type Formula 2D Diagram Parent
PCA
Query on PCA
H L-PEPTIDE LINKING C5 H7 N O3 GLU

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.93 Å
  • R-Value Free: 0.216
  • R-Value Work: 0.186
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 57.05 α = 90.00
b = 65.00 β = 111.80
c = 67.13 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-24
  • Released Date: 2016-09-14
  • Deposition author(s): Kitago, Y., Kaneko, K.K., Ogasawara, S., Kato, Y., Takagi, J.

Revision History

No revisions since initial release