5GGS

PD-1 in complex with pembrolizumab Fab

  • Classification: IMMUNE SYSTEM
  • Deposited: 2016-06-16 Released: 2016-11-09
  • Deposition author(s): Heo, Y.S.
  • Organism: Homo sapiens
  • Expression System: Escherichia coli-Pichia pastoris shuttle vector pPpARG4
  • Mutation(s): 1

Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.179

Literature

Macromolecules
Sequence Display for 5GGS

Classification: IMMUNE SYSTEM

Total Structure Weight: 125778.10

Macromolecule Entities
Molecule Chains Length Organism Details
heavy chain A, C 232 Homo sapiens
light chain B, D 218 Homo sapiens
Programmed cell death protein 1 Y, Z 123 Homo sapiens Fragment: UNP residues 26-148
Mutation: C93S
Gene Name(s): PDCD1 Gene View PD1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG


Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.0 Å
  • R-Value Free: 0.228
  • R-Value Work: 0.179
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 54.17 α = 105.69
b = 54.19 β = 96.99
c = 104.04 γ = 96.06

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2016-06-16
  • Released Date: 2016-11-09
  • Deposition author(s): Heo, Y.S.

Revision History

  • Version 1_0: 2016-11-09

    Type: Initial release

  • Version 1_1: 2016-11-16

    Type: Database references