5FQN

Crystal structure of M. musculus protein arginine methyltransferase PRMT6 with SAH at 1.65 Angstroms

• PDB DOI: https://doi.org/10.2210/pdb5FQN/pdb

• Classification: TRANSFERASE
• Organism(s): Mus musculus
• Expression System: Escherichia coli BL21(DE3)
• Mutation(s): Yes 


• Deposited: 2015-12-14 Released: 2017-01-18 
• Deposition Author(s): Bonnefond, L., Cavarelli, J.

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Experimental Data Snapshot

• Method: X-RAY DIFFRACTION
• Resolution: 1.66 Å
• R-Value Free: 0.211 
• R-Value Work: 0.178 
• R-Value Observed: 0.179 

Literature

Crystal Strcutures of Prmt6 in Complex with Sah in Alternative Conformations

Bonnefond, L., Cura, V., Troffer-Charlier, N., Cavarelli, J.

To be published.

Biological Assembly 1  

Global Symmetry: Cyclic - C2  (Explore in 3D)
Global Stoichiometry: Homo 2-mer - A2 

Biological assembly 1 assigned by authors and generated by PISA (software)

Macromolecule Content

• Total Structure Weight: 44.74 kDa 
• Atom Count: 2,801 
• Modelled Residue Count: 322 
• Deposited Residue Count: 402 
• Unique protein chains: 1

Macromolecules

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
PROTEIN ARGININE METHYLTRANSFERASE 6	A	402	Mus musculus	Mutation(s): 1  EC: 2.1.1 (PDB Primary Data), 2.1.1.125 (PDB Primary Data)
UniProt & NIH Common Fund Data Resources
Find proteins for Q6NZB1 (Mus musculus) Explore Q6NZB1  Go to UniProtKB:  Q6NZB1
IMPC:  MGI:2139971

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram
SAH	B [auth A]	S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N

Experimental Data & Validation

Experimental Data

• Method: X-RAY DIFFRACTION
• Resolution: 1.66 Å
• R-Value Free: 0.211 
• R-Value Work: 0.178 
• R-Value Observed: 0.179 
• Space Group: I 4₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 79.426	α = 90
b = 79.426	β = 90
c = 118.567	γ = 90

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
Aimless	data scaling
PHASER	phasing

Structure Validation

Entry History 

Deposition Data

• Released Date: 2017-01-18 
Deposition Author(s): Bonnefond, L., Cavarelli, J.

Revision History  

• Version 1.0: 2017-01-18
  Type: Initial release
  
• Version 1.1: 2024-01-10
  Changes: Data collection, Database references, Derived calculations, Other, Refinement description