5FDW

Structure of HLA-A2:01 with peptide Y10L


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.213

Literature

Macromolecules
Sequence Display for 5FDW

Classification: IMMUNE SYSTEM

Total Structure Weight: 44769.82

Macromolecule Entities
Molecule Chains Length Organism Details
HLA class I histocompatibility antigen, A-2 alpha chain A 274 Homo sapiens Gene Name(s): HLA-A Gene View HLAA
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Beta-2-microglobulin B 100 Homo sapiens Gene Name(s): B2M Gene View CDABP0092 HDCMA22P
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Peptide Y10L C 10 Toxoplasma gondii

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

A GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.7 Å
  • R-Value Free: 0.285
  • R-Value Work: 0.213
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 56.38 α = 90.00
b = 79.49 β = 116.09
c = 57.21 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-16
  • Released Date: 2016-12-21
  • Deposition author(s): Zajonc, D.M., Remesh, S.G.

Revision History

  • Version 1_0: 2016-12-21

    Type: Initial release

  • Version 1_1: 2017-11-01

    Type: Author supporting evidence