5FCR

MOUSE COMPLEMENT FACTOR D


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.150

Literature

Macromolecules
Sequence Display for 5FCR

Classification: HYDROLASE

Total Structure Weight: 102767.76

Macromolecule Entities
Molecule Chains Length Organism Details
Complement factor D A, B, C, D 234 Mus musculus EC#: 3.4.21.46 IUBMB
Gene Name(s): Cfd Adn Df
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 4 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
EPE
Query on EPE

B, C 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
HEPES (Synonym)
C8 H18 N2 O4 S
JKMHFZQWWAIEOD-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SO4
Query on SO4

C SULFATE ION
O4 S
QAOWNCQODCNURD-UHFFFAOYSA-L
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
DMS
Query on DMS

D DIMETHYL SULFOXIDE
C2 H6 O S
IAZDPXIOMUYVGZ-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.25 Å
  • R-Value Free: 0.196
  • R-Value Work: 0.150
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 51.27 α = 90.46
b = 52.87 β = 98.04
c = 84.28 γ = 90.14

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-12-15
  • Released Date: 2016-10-26
  • Deposition author(s): Mac Sweeney, A.

Revision History

  • Version 1_0: 2016-10-26

    Type: Initial release

  • Version 1_1: 2016-11-02

    Type: Database references

  • Version 1_2: 2016-11-23

    Type: Database references