5ESZ

Crystal Structure of Broadly Neutralizing Antibody CH04, Isolated from Donor CH0219, in Complex with Scaffolded Trimeric HIV-1 Env V1V2 Domain from the Clade AE Strain A244


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.19 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.252

Literature

Macromolecules
Sequence Display for 5ESZ

Classification: IMMUNE SYSTEM

Total Structure Weight: 153763.41

Macromolecule Entities
Molecule Chains Length Organism Details
CH04 Heavy Chain A, H 244 Homo sapiens
CH04 Light Chain B, L 215 Homo sapiens
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase,Envelope glycoprotein gp160 C, G 222 Haemophilus influenzae Human immunodeficiency virus 1 EC#: 4.6.1.12 IUBMB
Fragment: UNP Residues 125-205
Mutation: M112L, ΔD64, ΔT65, ΔD66, ΔM67, ΔQ68, ΔY69
Gene Name(s): ispF HI_0671 env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, C, G, L N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MAN
Query on MAN

A, C, G, L ALPHA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-PQMKYFCFSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
BMA
Query on BMA

A, C, G, L BETA-D-MANNOSE
C6 H12 O6
WQZGKKKJIJFFOK-RWOPYEJCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 4.19 Å
  • R-Value Free: 0.282
  • R-Value Work: 0.252
  • Space Group: P 63

Unit Cell:

Length (Å) Angle (°)
a = 116.72 α = 90.00
b = 116.72 β = 90.00
c = 249.56 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-11-17
  • Released Date: 2015-12-16
  • Deposition author(s): Gorman, J., Yang, M., Kwong, P.D.

Revision History

  • Version 1_0: 2015-12-16

    Type: Initial release