Crystal structure of SAM-dependent methyltransferase from Thiobacillus denitrificans in complex with S-Adenosyl-L-homocysteine
LaRowe, C., Shabalin, I.G., Kutner, J., Handing, K.B., Minor, W.To be published.
Experimental Data Snapshot
Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
SAM-dependent methyltransferase | 248 | Thiobacillus denitrificans ATCC 25259 | Mutation(s): 0  Gene Names: Tbd_1076 EC: 2.1.1 | ||
UniProt | |||||
Find proteins for Q3SJX0 (Thiobacillus denitrificans (strain ATCC 25259)) Explore Q3SJX0  Go to UniProtKB:  Q3SJX0 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q3SJX0 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 2 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
SAH Query on SAH | B [auth A] | S-ADENOSYL-L-HOMOCYSTEINE C14 H20 N6 O5 S ZJUKTBDSGOFHSH-WFMPWKQPSA-N | |||
NA Query on NA | C [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Modified Residues 1 Unique | |||||
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ID | Chains | Type | Formula | 2D Diagram | Parent |
MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | MET |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 157.536 | α = 90 |
b = 157.536 | β = 90 |
c = 157.536 | γ = 90 |
Software Name | Purpose |
---|---|
BLU-MAX | data collection |
HKL-3000 | data scaling |
HKL-3000 | phasing |
SHELX | phasing |
DM | phasing |
MLPHARE | phasing |
REFMAC | refinement |
Coot | model building |
PDB_EXTRACT | data extraction |
HKL-3000 | data reduction |
Funding Organization | Location | Grant Number |
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National Institutes of Health/National Institute of General Medical Sciences (NIH/NIGMS) | United States | -- |