5E7O

Crystal structure of the perchlorate reductase PcrAB mutant W461E of PcrA from Azospira suillum PS

Structural Biology Knowledgebase: 5E7O SBKB.org


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.195

Literature

Macromolecules
Sequence Display for 5E7O

Classification: OXIDOREDUCTASE

Total Structure Weight: 856144.00

Macromolecule Entities
Molecule Chains Length Organism Details
DMSO reductase family type II enzyme, molybdopterin subunit A, C, E..., G, I, KA, C, E, G, I, K 899 Azospira oryzae Fragment: UNP residues 29-927
Mutation: W461E
Gene Name(s): Dsui_0149
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
DMSO reductase family type II enzyme, iron-sulfur subunit B, D, F..., H, J, LB, D, F, H, J, L 333 Azospira oryzae Gene Name(s): Dsui_0148
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 7 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
MD1
Query on MD1

A, C, E, G, I, K PHOSPHORIC ACID 4-(2-AMINO-4-OXO-3,4,5,6,- TETRAHYDRO-PTERIDIN-6-YL)-2-HYDROXY-3,4-DIMERCAPTO- BUT-3-EN-YL ESTER GUANYLATE ESTER
C20 H26 N10 O13 P2 S2
IRGDLSAXQOKWLX-XHEYTWMPSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MGD
Query on MGD

A, C, E, G, I, K 2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9- TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN- 4-ONE GUANOSINE DINUCLEOTIDE
MOLYBDOPTERIN GUANOSINE DINUCLEOTIDE (Synonym)
C20 H26 N10 O13 P2 S2
VQAGYJCYOLHZDH-ILXWUORBSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
SF4
Query on SF4

A, B, C, D, E, F, G, H, I, J, K, L IRON/SULFUR CLUSTER
Fe4 S4
LJBDFODJNLIPKO-VKOJMFJBAC
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
F3S
Query on F3S

B, D, F, H, J, L FE3-S4 CLUSTER
Fe3 S4
FCXHZBQOKRZXKS-MZMDZPPWAW
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MO
Query on MO

A, C, E, G, I, K MOLYBDENUM ATOM
Mo
ZOKXTWBITQBERF-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
GOL
Query on GOL

A, E GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
EDO
Query on EDO

A, B, C, D, E, F, G, H, I, J, K, L 1,2-ETHANEDIOL
ETHYLENE GLYCOL (Synonym)
C2 H6 O2
LYCAIKOWRPUZTN-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.4 Å
  • R-Value Free: 0.249
  • R-Value Work: 0.195
  • Space Group: P 1 21 1

Unit Cell:

Length (Å) Angle (°)
a = 135.59 α = 90.00
b = 253.13 β = 119.77
c = 135.80 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-10-12
  • Released Date: 2016-03-09
  • Deposition author(s): Tsai, C.-L., Tainer, J.A.

Revision History

  • 2016-05-11
    Type: Citation | Details: Citation
  • 2016-03-23
    Type: Citation | Details: Citation