5E22

The second PDZ domain of Ligand of Numb protein X 2 in the presence of an electric field of ~1 MV/cm along the crystallographic x axis, with eightfold extrapolation of structure factor differences.


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.289

Literature

Macromolecules
Sequence Display for 5E22

Classification: PROTEIN BINDING

Total Structure Weight: 20713.57

Macromolecule Entities
Molecule Chains Length Organism Details
Ligand of Numb protein X 2 A, B 95 Homo sapiens Fragment: Second PDZ domain (UNP residues 336-424)
Mutation: F338L
Gene Name(s): LNX2 Gene View PDZRN1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
GOL
Query on GOL

B GLYCEROL
2, (Synonym)
C3 H8 O3
PEDCQBHIVMGVHV-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.8 Å
  • R-Value Free: 0.313
  • R-Value Work: 0.289
  • Space Group: P 1

Unit Cell:

Length (Å) Angle (°)
a = 38.15 α = 113.31
b = 38.15 β = 113.31
c = 39.01 γ = 62.28

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-09-30
  • Released Date: 2016-12-07
  • Deposition author(s): Hekstra, D.R., White, K.I., Socolich, M.A., Henning, R.W., Srajer, V., Ranganathan, R.

Revision History

  • Version 1_0: 2016-12-07

    Type: Initial release

  • Version 1_1: 2017-01-11

    Type: Database references

  • Version 1_2: 2017-11-22

    Type: Refinement description