5D9R

Crystal structure of a conserved domain in the intermembrane space region of the plastid division protein ARC6


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.206 

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This is version 1.3 of the entry. See complete history


Literature

Crystal structure of a conserved domain in the intermembrane space region of the plastid division protein ARC6.

Kumar, N.Radhakrishnan, A.Su, C.C.Osteryoung, K.W.Yu, E.W.

(2016) Protein Sci 25: 523-529

  • DOI: https://doi.org/10.1002/pro.2825
  • Primary Citation of Related Structures:  
    5D9R

  • PubMed Abstract: 

    The chloroplast division machinery is composed of numerous proteins that assemble as a large complex to divide double-membraned chloroplasts through binary fission. A key mediator of division-complex formation is ARC6, a chloroplast inner envelope protein and evolutionary descendant of the cyanobacterial cell division protein Ftn2. ARC6 connects stromal and cytosolic contractile rings across the two membranes through interaction with an outer envelope protein within the intermembrane space (IMS). The ARC6 IMS region bears a structurally uncharacterized domain of unknown function, DUF4101, that is highly conserved among ARC6 and Ftn2 proteins. Here we report the crystal structure of this domain from Arabidopsis thaliana ARC6. The domain forms an α/β barrel open towards the outer envelope membrane but closed towards the inner envelope membrane. These findings provide new clues into how ARC6 and its homologs contribute to chloroplast and cyanobacterial cell division.


  • Organizational Affiliation

    Department of Chemistry, Iowa State University, Ames, Iowa, 50011.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic184Arabidopsis thalianaMutation(s): 0 
Gene Names: ARC6At5g42480MDH9.18
UniProt
Find proteins for Q9FIG9 (Arabidopsis thaliana)
Explore Q9FIG9 
Go to UniProtKB:  Q9FIG9
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ9FIG9
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.05 Å
  • R-Value Free: 0.223 
  • R-Value Work: 0.205 
  • R-Value Observed: 0.206 
  • Space Group: P 31 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 60.339α = 90
b = 60.339β = 90
c = 92.326γ = 120
Software Package:
Software NamePurpose
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
SHELXDEphasing

Structure Validation

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Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-11-11
    Type: Initial release
  • Version 1.1: 2016-02-10
    Changes: Database references
  • Version 1.2: 2017-11-22
    Changes: Database references, Derived calculations, Refinement description
  • Version 1.3: 2024-03-06
    Changes: Data collection, Database references