Structure of Xoo1075, a peptide deformylase from Xanthomonas oryzae pv oryzae, in complex with fragment 124
Ngo, H.P.T., Kang, L.W.To be published.
Experimental Data Snapshot
Starting Model: experimental
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Entity ID: 1 | |||||
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Molecule | Chains | Sequence Length | Organism | Details | Image |
Peptide deformylase | 171 | Xanthomonas oryzae pv. oryzae KACC 10331 | Mutation(s): 0  Gene Names: def, XOO1075 EC: 3.5.1.88 | ||
UniProt | |||||
Find proteins for Q5H3Z2 (Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85)) Explore Q5H3Z2  Go to UniProtKB:  Q5H3Z2 | |||||
Entity Groups   | |||||
Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
UniProt Group | Q5H3Z2 | ||||
Sequence AnnotationsExpand | |||||
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Ligands 4 Unique | |||||
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ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
CD Query on CD | C [auth A], D [auth A], E [auth A], F [auth A] | CADMIUM ION Cd WLZRMCYVCSSEQC-UHFFFAOYSA-N | |||
56T Query on 56T | G [auth A] | 2-(furan-2-yl)ethanamine C6 H9 N O ZQSLNSHMUQXSQJ-UHFFFAOYSA-N | |||
ACT Query on ACT | B [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M | |||
NA Query on NA | H [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |
Length ( Å ) | Angle ( ˚ ) |
---|---|
a = 58.702 | α = 90 |
b = 58.702 | β = 90 |
c = 265.366 | γ = 120 |
Software Name | Purpose |
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REFMAC | refinement |
HKL-2000 | data reduction |
HKL-2000 | data scaling |
HKL-2000 | phasing |