5CUU

Crystal structure of Trypanosoma cruzi Vacuolar Soluble Pyrophosphatases in complex with bisphosphonate inhibitor BPH-1260


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.194

Literature

Macromolecules
Sequence Display for 5CUU

Classification: METAL BINDING PROTEIN

Total Structure Weight: 96939.06

Macromolecule Entities
Molecule Chains Length Organism Details
Acidocalcisomal pyrophosphatase A, B 414 Trypanosoma cruzi Fragment: UNP residues 32-410
Gene Name(s):
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 3 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4GA
Query on 4GA

A, B 1-butyl-3-(2-hydroxy-2,2-diphosphonoethyl)- 1H-imidazol-3-ium
C9 H19 N2 O7 P2
JCMWHMYRNYPQAZ-UHFFFAOYSA-O
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MLT
Query on MLT

A, B D-MALATE
(2R)-2-HYDROXYBUTANEDIOIC ACID; 2-HYDROXY- SUCCINIC ACID (Synonym)
C4 H6 O5
BJEPYKJPYRNKOW-UWTATZPHSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
MG
Query on MG

A, B MAGNESIUM ION
Mg
JLVVSXFLKOJNIY-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.96 Å
  • R-Value Free: 0.273
  • R-Value Work: 0.194
  • Space Group: C 2 2 21

Unit Cell:

Length (Å) Angle (°)
a = 100.78 α = 90.00
b = 102.63 β = 90.00
c = 158.83 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-25
  • Released Date: 2016-03-02
  • Deposition author(s): Liu, W.D., Yang, Y.Y., Ko, T.P., Zheng, Y.Y., Chen, C.C., Guo, R.T.

Revision History

  • Version 1_0: 2016-03-02

    Type: Initial release

  • Version 1_1: 2016-03-09

    Type: Data collection