5CFP

Crystal structure of anemone STING (Nematostella vectensis) 'humanized' F276K in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]'


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.172

Literature

Macromolecules
Sequence Display for 5CFP

Classification: IMMUNE SYSTEM

Total Structure Weight: 48316.15

Macromolecule Entities
Molecule Chains Length Organism Details
Stimulator of Interferon Genes A, B 202 Nematostella vectensis Fragment: UNP Residues 178-377
Mutation: F276K
Gene Name(s): v1g246111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
C2E
Query on C2E

A, B 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)- 3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro- 2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine- 2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin- 6-one)
c-di-GMP, Cyclic diguanosine monophosphate (Synonym)
C20 H24 N10 O14 P2
PKFDLKSEZWEFGL-MHARETSRSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.07 Å
  • R-Value Free: 0.206
  • R-Value Work: 0.172
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 81.39 α = 90.00
b = 81.39 β = 90.00
c = 100.55 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-08
  • Released Date: 2015-08-26
  • Deposition author(s): Kranzusch, P.J., Wilson, S.C., Lee, A.S.Y., Berger, J.M., Doudna, J.A., Vance, R.E.

Revision History

  • Version 1_0: 2015-08-26

    Type: Initial release

  • Version 1_1: 2015-09-09

    Type: Database references

  • Version 1_2: 2015-09-30

    Type: Database references

  • Version 1_3: 2017-09-27

    Type: Author supporting evidence, Database references, Derived calculations