5CFN

Crystal structure of anemone STING (Nematostella vectensis) in complex with 3',3' c-di-AMP, c[A(3',5')pA(3',5')p]


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.221

Literature

Macromolecules
Sequence Display for 5CFN

Classification: IMMUNE SYSTEM

Total Structure Weight: 44768.27

Macromolecule Entities
Molecule Chains Length Organism Details
Stimulator of Interferon Genes A, B 187 Nematostella vectensis Fragment: UNP residues 193-377
Gene Name(s): v1g246111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
2BA
Query on 2BA

A (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9- bis(6-amino-9H-purin-9-yl)octahydro-2H,7H- difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine- 3,5,10,12-tetrol 5,12-dioxide
bis-(3',5')-cyclic-dimeric-Adenosine-monophosphate (Synonym)
C20 H24 N10 O12 P2
PDXMFTWFFKBFIN-XPWFQUROSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.95 Å
  • R-Value Free: 0.246
  • R-Value Work: 0.221
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 81.66 α = 90.00
b = 81.66 β = 90.00
c = 98.76 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-08
  • Released Date: 2015-08-26
  • Deposition author(s): Kranzusch, P.J., Wilson, S.C., Lee, A.S.Y., Berger, J.M., Doudna, J.A., Vance, R.E.

Revision History

  • 2015-09-09
    Type: Database references
  • 2015-09-30
    Type: Database references
  • 2017-07-12
    Type: Author supporting evidence, Database references, Derived calculations