5CFM

Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' cGAMP, c[G(3', 5')pA(3', 5')p]


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.170

Literature

Macromolecules
Sequence Display for 5CFM

Classification: IMMUNE SYSTEM

Total Structure Weight: 44882.26

Macromolecule Entities
Molecule Chains Length Organism Details
Stimulator of Interferon Genes A, B 187 Nematostella vectensis Fragment: UNP residues 193-377
Gene Name(s): v1g246111
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 2 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
4BW
Query on 4BW

A 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)- 9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy- 5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'- j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin- 2-yl]-1,9-dihydro-6H-purin-6-one
3',3' cGAMP, c-GMP-AMP, c[G(3',5')pA(3',5')p] (Synonym)
C20 H24 N10 O13 P2
RFCBNSCSPXMEBK-INFSMZHSSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)
FLC
Query on FLC

A, B CITRATE ANION
C6 H5 O7
KRKNYBCHXYNGOX-UHFFFAOYSA-K
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.99 Å
  • R-Value Free: 0.190
  • R-Value Work: 0.170
  • Space Group: P 31

Unit Cell:

Length (Å) Angle (°)
a = 81.27 α = 90.00
b = 81.27 β = 90.00
c = 99.12 γ = 120.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-08
  • Released Date: 2015-08-26
  • Deposition author(s): Kranzusch, P.J., Wilson, S.C., Lee, A.S.Y., Berger, J.M., Doudna, J.A., Vance, R.E.

Revision History

  • 2015-09-09
    Type: Database references
  • 2015-09-30
    Type: Database references