5CD7

Crystal structure of the NTD L199M of Drosophila Oskar protein


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.217 

wwPDB Validation   3D Report Full Report


This is version 1.2 of the entry. See complete history


Literature

Structure of Drosophila Oskar reveals a novel RNA binding protein

Yang, N.Yu, Z.Hu, M.Wang, M.Lehmann, R.Xu, R.M.

(2015) Proc Natl Acad Sci U S A 112: 11541-11546

  • DOI: https://doi.org/10.1073/pnas.1515568112
  • Primary Citation of Related Structures:  
    5CD7, 5CD8, 5CD9

  • PubMed Abstract: 

    Oskar (Osk) protein plays critical roles during Drosophila germ cell development, yet its functions in germ-line formation and body patterning remain poorly understood. This situation contrasts sharply with the vast knowledge about the function and mechanism of osk mRNA localization. Osk is predicted to have an N-terminal LOTUS domain (Osk-N), which has been suggested to bind RNA, and a C-terminal hydrolase-like domain (Osk-C) of unknown function. Here, we report the crystal structures of Osk-N and Osk-C. Osk-N shows a homodimer of winged-helix-fold modules, but without detectable RNA-binding activity. Osk-C has a lipase-fold structure but lacks critical catalytic residues at the putative active site. Surprisingly, we found that Osk-C binds the 3'UTRs of osk and nanos mRNA in vitro. Mutational studies identified a region of Osk-C important for mRNA binding. These results suggest possible functions of Osk in the regulation of stability, regulation of translation, and localization of relevant mRNAs through direct interaction with their 3'UTRs, and provide structural insights into a novel protein-RNA interaction motif involving a hydrolase-related domain.


  • Organizational Affiliation

    National Laboratory of Biomacromolecules, Institute of Biophysics, Chinese Academy of Sciences, Beijing 100101, China; College of Life Sciences, University of Chinese Academy of Sciences, Beijing 100049, China; yangna@moon.ibp.ac.cn Ruth.Lehmann@med.nyu.edu rmxu@sun5.ibp.ac.cn.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Maternal effect protein oskar
A, B, C, D, E
A, B, C, D, E, F
77Drosophila melanogasterMutation(s): 1 
Gene Names: oskCG10901
UniProt
Find proteins for P25158 (Drosophila melanogaster)
Explore P25158 
Go to UniProtKB:  P25158
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupP25158
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.50 Å
  • R-Value Free: 0.270 
  • R-Value Work: 0.214 
  • R-Value Observed: 0.217 
  • Space Group: P 1 21 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 62.962α = 90
b = 38.307β = 95.54
c = 102.13γ = 90
Software Package:
Software NamePurpose
DENZOdata collection
HKL-2000data scaling
PHENIXrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
PHENIXphasing

Structure Validation

View Full Validation Report



Entry History & Funding Information

Deposition Data


Funding OrganizationLocationGrant Number
National Natural Science Foundation of ChinaChina31370734
National Natural Science Foundation of ChinaChina31400670
MOSTChina2015CB856202
National Key New Drog Creation and Manufacturing programChina2014ZX09507002
CASChinaXDB08010100
CASChinaKJZDEW-L05

Revision History  (Full details and data files)

  • Version 1.0: 2015-09-02
    Type: Initial release
  • Version 1.1: 2015-09-30
    Changes: Database references
  • Version 1.2: 2017-10-18
    Changes: Author supporting evidence, Database references, Derived calculations