Macromolecules
Sequence Display for 5C8J

Classification: MEMBRANE PROTEIN

Total Structure Weight: 292699.78

Macromolecule Entities
Molecule Chains Length Organism Details
Antibody fragment, heavy chain A, C, E, G 239 Homo sapiens Details: OBTAINED BY PHAGE DISPLAY FROM A LIBRARY OF HUMAN IGG. ANTIBODY FRAGMENT; THE CDRS ARE COMPLETELY SYNTHETIC
Antibody fragment, light chain B, D, F, H 215 Homo sapiens Details: OBTAINED BY PHAGE DISPLAY FROM A LIBRARY OF HUMAN IGG. ANTIBODY FRAGMENT; THE CDRS ARE COMPLETELY SYNTHETIC
Protein MJ0480 I, J, K, L 207 Methanocaldococcus jannaschii Gene Name(s): MJ0480
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Membrane Protein

Source: mpstruc | Group: ALPHA-HELICAL

Subgroup Name: Sec and Translocase Proteins

Protein Name: DUF106 YidC-like protein


Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
LMT
Query on LMT

L DODECYL-BETA-D-MALTOSIDE
C24 H46 O11
NLEBIOOXCVAHBD-QKMCSOCLSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 3.5 Å
  • R-Value Free: 0.302
  • R-Value Work: 0.253
  • Space Group: P 21 21 2

Unit Cell:

Length (Å) Angle (°)
a = 180.25 α = 90.00
b = 251.42 β = 90.00
c = 96.11 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-06-25
  • Released Date: 2015-09-02
  • Deposition author(s): Borowska, M.T., Dominik, P.K., Anghel, S.A., Kossiakoff, A.A., Keenan, R.J.

Revision History

  • Version 1_0: 2015-09-02

    Type: Initial release

  • Version 1_1: 2015-09-16

    Type: Database references

  • Version 1_2: 2015-09-23

    Type: Derived calculations

  • Version 1_3: 2017-09-13

    Type: Author supporting evidence, Derived calculations