5A8H

cryo-ET subtomogram averaging of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195


Experimental Data Snapshot

  • Method: ELECTRON MICROSCOPY
  • Resolution: 23.0 Å
  • Aggregation State: Particle
  • Reconstruction Method: Tomography

Literature

Macromolecules
Sequence Display for 5A8H

Classification: VIRAL PROTEIN / IMMUNE SYSTEM

Total Structure Weight: 468133.84

Macromolecule Entities
Molecule Chains Length Organism Details
HIV-1 GP120 A, G, M 313 Human immunodeficiency virus 1 Gene Name(s): env
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
T-CELL SURFACE GLYCOPROTEIN CD4 B, H, N 185 Homo sapiens Fragment: SOLUBLE CD4 D1-D2 DOMAINS, RESIDUES26-208
Gene Name(s): CD4 Gene View
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG
FAB OF BROADLY NEUTRALIZING ANTIBODY 17B C, I, O 214 Homo sapiens
FAB OF BROADLY NEUTRALIZING ANTIBODY 17B D, J, P 229 Homo sapiens
FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5 E, K, Q 215 Homo sapiens
FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5 F, L, R 244 Homo sapiens

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
NAG
Query on NAG

A, F, G, L, M, R N-ACETYL-D-GLUCOSAMINE
C8 H15 N O6
OVRNDRQMDRJTHS-FMDGEEDCSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: ELECTRON MICROSCOPY
  • Resolution: 23.0 Å
  • Reconstruction Method: Tomography

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2015-07-15
  • Released Date: 2015-08-05
  • Deposition author(s): Scharf, L., Wang, H., Gao, H., Chen, S., McDowall, A., Bjorkman, P.

Revision History

  • Version 1_0: 2015-08-05

    Type: Initial release

  • Version 1_1: 2017-02-15

    Type: Database references

  • Version 1_2: 2017-08-30

    Type: Data collection