4XK9

Crystal structure of A-AChBP in complex with pinnatoxin G


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.200 

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Ligand Structure Quality Assessment 


This is version 1.2 of the entry. See complete history


Literature

Marine Macrocyclic Imines, Pinnatoxins A and G: Structural Determinants and Functional Properties to Distinguish Neuronal alpha 7 from Muscle alpha 12 beta gamma delta nAChRs.

Bourne, Y.Sulzenbacher, G.Radic, Z.Araoz, R.Reynaud, M.Benoit, E.Zakarian, A.Servent, D.Molgo, J.Taylor, P.Marchot, P.

(2015) Structure 23: 1106-1115

  • DOI: https://doi.org/10.1016/j.str.2015.04.009
  • Primary Citation of Related Structures:  
    4XHE, 4XK9

  • PubMed Abstract: 

    Pinnatoxins are macrocyclic imine phycotoxins associated with algal blooms and shellfish toxicity. Functional analysis of pinnatoxin A and pinnatoxin G by binding and voltage-clamp electrophysiology on membrane-embedded neuronal α7, α4β2, α3β2, and muscle-type α12βγδ nicotinic acetylcholine receptors (nAChRs) reveals high-affinity binding and potent antagonism for the α7 and α12βγδ subtypes. The toxins also bind to the nAChR surrogate, acetylcholine-binding protein (AChBP), with low Kd values reflecting slow dissociation. Crystal structures of pinnatoxin-AChBP complexes (1.9-2.2 Å resolution) show the multiple anchoring points of the hydrophobic portion, the cyclic imine, and the substituted bis-spiroketal and cyclohexene ring systems of the pinnatoxins that dictate tight binding between the opposing loops C and F at the receptor subunit interface, as observed for the 13-desmethyl-spirolide C and gymnodimine A congeners. Uniquely, however, the bulky bridged EF-ketal ring specific to the pinnatoxins extends radially from the interfacial-binding pocket to interact with the sequence-variable loop F and govern nAChR subtype selectivity and central neurotoxicity.


  • Organizational Affiliation

    Aix-Marseille Université, Laboratoire Architecture et Fonction des Macromolécules Biologiques, Campus Luminy, 13288 Marseille cedex 9, France; Centre National de la Recherche Scientifique, Laboratoire Architecture et Fonction des Macromolécules Biologiques, Campus Luminy, 13288 Marseille cedex 9, France. Electronic address: yves.bourne@afmb.univ-mrs.fr.


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
Soluble acetylcholine receptor
A, B, C, D, E
A, B, C, D, E, F, G, H, I, J
228Aplysia californicaMutation(s): 0 
UniProt
Find proteins for Q8WSF8 (Aplysia californica)
Explore Q8WSF8 
Go to UniProtKB:  Q8WSF8
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ8WSF8
Sequence Annotations
Expand
  • Reference Sequence
Small Molecules
Ligands 2 Unique
IDChains Name / Formula / InChI Key2D Diagram3D Interactions
41J
Query on 41J

Download Ideal Coordinates CCD File 
K [auth A]
M [auth B]
O [auth C]
Q [auth D]
R [auth E]
K [auth A],
M [auth B],
O [auth C],
Q [auth D],
R [auth E],
T [auth F],
U [auth G],
W [auth H],
Y [auth I],
Z [auth J]
Pinnatoxin G
C42 H63 N O7
KOWHOZGQQMALMV-WVYVHXBHSA-N
CL
Query on CL

Download Ideal Coordinates CCD File 
AA [auth J]
L [auth A]
N [auth B]
P [auth C]
S [auth E]
AA [auth J],
L [auth A],
N [auth B],
P [auth C],
S [auth E],
V [auth G],
X [auth H]
CHLORIDE ION
Cl
VEXZGXHMUGYJMC-UHFFFAOYSA-M
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.20 Å
  • R-Value Free: 0.211 
  • R-Value Work: 0.199 
  • R-Value Observed: 0.200 
  • Space Group: C 1 2 1
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 184.844α = 90
b = 142.918β = 126.48
c = 142.13γ = 90
Software Package:
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
SCALAdata scaling
PHASERphasing

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-06-03
    Type: Initial release
  • Version 1.1: 2015-06-10
    Changes: Database references
  • Version 1.2: 2024-01-10
    Changes: Data collection, Database references, Refinement description