Download MendeleyHigh resolution crystal structure of catalytic domain of Chitinase 60 from psychrophilic bacteria Moritella marina.
Malecki, P.H., Vorgias, C.E., Rypniewski, W.To be published.
4W5Z
High resolution crystal structure of catalytic domain of Chitinase 60 from psychrophilic bacteria Moritella marina.
- PDB DOI: https://doi.org/10.2210/pdb4W5Z/pdb
- Classification: HYDROLASE
- Organism(s): Moritella marina
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-08-19 Released: 2015-08-26
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.32 Å
- R-Value Free: 0.150
- R-Value Work: 0.111
- R-Value Observed: 0.111
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Chitinase 60 | 345 | Moritella marina | Mutation(s): 0 Gene Names: chi60 EC: 3.2.1.14 |  | |
UniProt | |||||
Find proteins for B1VBB0 (Moritella marina) Explore B1VBB0 Go to UniProtKB: B1VBB0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | B1VBB0 | ||||
Sequence AnnotationsExpand | |||||
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Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| MPD Query on MPD | C [auth A] | (4S)-2-METHYL-2,4-PENTANEDIOL C6 H14 O2 SVTBMSDMJJWYQN-YFKPBYRVSA-N |  | ||
| ACT Query on ACT | E [auth A], K [auth A], N [auth A] | ACETATE ION C2 H3 O2 QTBSBXVTEAMEQO-UHFFFAOYSA-M |  | ||
| CL Query on CL | I [auth A], J [auth A] | CHLORIDE ION Cl VEXZGXHMUGYJMC-UHFFFAOYSA-M |  | ||
| NA Query on NA | B [auth A] D [auth A] F [auth A] G [auth A] H [auth A] | SODIUM ION Na FKNQFGJONOIPTF-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.32 Å
- R-Value Free: 0.150
- R-Value Work: 0.111
- R-Value Observed: 0.111
- Space Group: C 2 2 21
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 50.691 | α = 90 |
| b = 72.686 | β = 90 |
| c = 171.169 | γ = 90 |
| Software Name | Purpose |
|---|---|
| PDB_EXTRACT | data extraction |
| XSCALE | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| XDS | data reduction |
| XSCALE | data reduction |
Entry History & Funding Information
Deposition Data
- Released Date: 2015-08-26 Deposition Author(s): Malecki, P.H., Vorgias, C.E., Rypniewski, W.
| Funding Organization | Location | Grant Number |
|---|---|---|
| Poland | The project was co-funded by the European Union within the European Regional Development Fund. |
Revision History (Full details and data files)
- Version 1.0: 2015-08-26
Type: Initial release - Version 1.1: 2024-01-10
Changes: Data collection, Database references, Derived calculations, Refinement description
