4UTI

XenA - oxidized - Y183F variant in complex with coumarin


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.10 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.125 
  • R-Value Observed: 0.125 

wwPDB Validation   3D Report Full Report


Ligand Structure Quality Assessment 


This is version 2.2 of the entry. See complete history


Literature

Redox-dependent substrate-cofactor interactions in the Michaelis-complex of a flavin-dependent oxidoreductase

Werther, T.Wahlefeld, S.Salewski, J.Kuhlmann, U.Zebger, I.Hildebrandt, P.Dobbek, H.

(2017) Nat Commun 8: 16084


Macromolecules
Find similar proteins by:  (by identity cutoff)  |  3D Structure
Entity ID: 1
MoleculeChains Sequence LengthOrganismDetailsImage
NADH:flavin oxidoreductase365Pseudomonas putidaMutation(s): 1 
Gene Names: B7H19_27640
UniProt
Find proteins for Q3ZDM6 (Pseudomonas putida)
Explore Q3ZDM6 
Go to UniProtKB:  Q3ZDM6
Entity Groups  
Sequence Clusters30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt GroupQ3ZDM6
Sequence Annotations
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  • Reference Sequence
Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 1.10 Å
  • R-Value Free: 0.141 
  • R-Value Work: 0.125 
  • R-Value Observed: 0.125 
  • Space Group: I 2 2 2
Unit Cell:
Length ( Å )Angle ( ˚ )
a = 57.87α = 90
b = 83.397β = 90
c = 156.366γ = 90
Software Package:
Software NamePurpose
PHENIXrefinement

Structure Validation

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Ligand Structure Quality Assessment 


Entry History 

Deposition Data

Revision History  (Full details and data files)

  • Version 1.0: 2015-08-05
    Type: Initial release
  • Version 1.1: 2017-08-16
    Changes: Database references
  • Version 2.0: 2017-08-23
    Changes: Atomic model, Database references, Source and taxonomy, Structure summary
  • Version 2.1: 2018-04-04
    Changes: Data collection
  • Version 2.2: 2024-05-08
    Changes: Data collection, Database references, Derived calculations, Other