4TOP

Glycine max glutathione transferase

PDB DOI: https://doi.org/10.2210/pdb4TOP/pdb
Entry: 4TOP supersedes: 3FHS

Classification: TRANSFERASE
Organism(s): Glycine max
Expression System: Escherichia coli
Mutation(s): No

Deposited: 2014-06-06 Released: 2014-06-25
Deposition Author(s): Axarli, I., Dhavala, P., Papageorgiou, A.C.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.240
R-Value Work: 0.198
R-Value Observed: 0.200

wwPDB Validation 3D Report Full Report

Ligand Structure Quality Assessment

This is version 1.4 of the entry. See complete history.

Literature

Comparative analysis of the structural and functional features of two homologous tau class glutathione transferases from Glycine max

Skopelitou, K., Muleta, A., Papageorgiou, A.C., Pavli, O., Flemetakis, E., Chronopoulou, E., Skaracis, G., Labrou, N.

To be published.

Macromolecule Content

Total Structure Weight: 51.89 kDa
Atom Count: 3,872
Modelled Residue Count: 437
Deposited Residue Count: 438
Unique protein chains: 1

Macromolecules

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(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
2,4-D inducible glutathione S-transferase	A, B	219	Glycine max	Mutation(s): 0 Gene Names: GSTa EC: 2.5.1.18
UniProt
Find proteins for O49235 (Glycine max) Explore O49235 Go to UniProtKB: O49235
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	O49235
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 1 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
GSH Query on GSH Download Ideal Coordinates CCD File SDF format, chain C [auth A] SDF format, chain D [auth B] MOL2 format, chain C [auth A] MOL2 format, chain D [auth B]	C [auth A], D [auth B]	GLUTATHIONE C₁₀ H₁₇ N₃ O₆ S RWSXRVCMGQZWBV-WDSKDSINSA-N		Interactions Focus chain C [auth A] Focus chain D [auth B] Interactions & Density Focus chain C [auth A] Focus chain D [auth B]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.240
R-Value Work: 0.198
R-Value Observed: 0.200
Space Group: P 6₁

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 136.262	α = 90
b = 136.262	β = 90
c = 90.735	γ = 120

Software Package:

Software Name	Purpose
PHENIX	refinement
XDS	data reduction
XSCALE	data scaling
PHASER	phasing

Structure Validation

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Ligand Structure Quality Assessment

Entry History

Deposition Data

Released Date: 2014-06-25

Deposition Author(s):

Axarli, I.

Dhavala, P.

Papageorgiou, A.C.

This entry supersedes: 3FHS

Revision History (Full details and data files)

Version 1.0: 2014-06-25
Type: Initial release
Version 1.1: 2015-02-04
Changes: Other
Version 1.2: 2019-06-12
Changes: Data collection, Structure summary
Version 1.3: 2019-07-17
Changes: Data collection
Version 1.4: 2023-12-20
Changes: Data collection, Database references, Refinement description

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Help and Resources

4TOP

Glycine max glutathione transferase

Comparative analysis of the structural and functional features of two homologous tau class glutathione transferases from Glycine max

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Ligand Structure Quality Assessment

Deposition Data

Revision History (Full details and data files)