4RZV

Crystal structure of the BRAF (R509H) kinase domain monomer bound to Vemurafenib


Experimental Data Snapshot

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.204

Literature

Macromolecules
Sequence Display for 4RZV

Classification: Transferase / Transferase Inhibitor

Total Structure Weight: 65007.19

Macromolecule Entities
Molecule Chains Length Organism Details
Serine/threonine-protein kinase B-raf A, B 281 Homo sapiens EC#: 2.7.11.1 IUBMB
Fragment: Protein kinase domain residues 443-723
Mutation: R509H, I543A, I544S, I551K, Q562R, L588N, K630S, F667E, Y673S, A688R, L706S, Q709R, S713E, L716E, S720E, P722S, K723G
Gene Name(s): BRAF Gene View BRAF1 RAFB1
Metabolic Pathways
Maps:       
Reactions:
ESCHER  BiGG

Small Molecules
Ligands 1 Unique
ID Chains Name / Formula / InChI Key 2D Diagram 3D Interactions
032
Query on 032

A, B N-(3-{[5-(4-chlorophenyl)-1H-pyrrolo[2,3- b]pyridin-3-yl]carbonyl}-2,4-difluorophenyl)propane- 1-sulfonamide
PLX4032, (Synonym)
C23 H18 Cl F2 N3 O3 S
GPXBXXGIAQBQNI-UHFFFAOYSA-N
Ligand Explorer NGL
 
Binding Pocket (JSmol)
 
Electron Density (JSmol)

Experimental Data & Validation

Experimental Data

  • Method: X-RAY DIFFRACTION
  • Resolution: 2.99 Å
  • R-Value Free: 0.267
  • R-Value Work: 0.204
  • Space Group: I 2 2 2

Unit Cell:

Length (Å) Angle (°)
a = 64.97 α = 90.00
b = 71.70 β = 90.00
c = 243.28 γ = 90.00

Structure Validation

View Full Validation Report or Ramachandran Plots



Entry History

Deposition Data

  • Deposited Date: 2014-12-24
  • Released Date: 2016-08-10
  • Deposition author(s): Wu, Y., Gavathiotis, E.

Revision History

  • Version 1_0: 2016-08-10

    Type: Initial release

  • Version 1_1: 2017-10-04

    Type: Structure summary