4QIE

Crystal Structure of PduA with edge mutation K26D

PDB DOI: https://doi.org/10.2210/pdb4QIE/pdb

Classification: STRUCTURAL PROTEIN
Organism(s): Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Expression System: Escherichia coli
Mutation(s): Yes

Deposited: 2014-05-30 Released: 2015-06-10
Deposition Author(s): Pang, A.H., Sawaya, M.R., Yeates, T.O.

Experimental Data Snapshot

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.238
R-Value Work: 0.201
R-Value Observed: 0.205

wwPDB Validation 3D Report Full Report

This is version 1.1 of the entry. See complete history.

Literature

Crystal Structure of PduA with edge mutation K26D

Pang, A.H., Sawaya, M.R., Bobik, T.A., Yeates, T.O.

To be published.

Macromolecule Content

Total Structure Weight: 95.67 kDa
Atom Count: 5,600
Modelled Residue Count: 779
Deposited Residue Count: 918
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Propanediol utilization protein PduA	A, B, C, D, E A, B, C, D, E, F, G, H, I	102	Salmonella enterica subsp. enterica serovar Typhimurium str. LT2	Mutation(s): 1 Gene Names: pduA, STM2038
UniProt
Find proteins for P0A1C7 (Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720)) Explore P0A1C7 Go to UniProtKB: P0A1C7
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P0A1C7
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 2 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
SO4 Query on SO4 Download Ideal Coordinates CCD File SDF format, chain K [auth A] SDF format, chain L [auth D] SDF format, chain N [auth H] MOL2 format, chain K [auth A] MOL2 format, chain L [auth D] MOL2 format, chain N [auth H]	K [auth A], L [auth D], N [auth H]	SULFATE ION O₄ S QAOWNCQODCNURD-UHFFFAOYSA-L		Interactions Focus chain K [auth A] Focus chain L [auth D] Focus chain N [auth H] Interactions & Density Focus chain K [auth A] Focus chain L [auth D] Focus chain N [auth H]
GOL Query on GOL Download Ideal Coordinates CCD File SDF format, chain J [auth A] SDF format, chain M [auth G] MOL2 format, chain J [auth A] MOL2 format, chain M [auth G]	J [auth A], M [auth G]	GLYCEROL C₃ H₈ O₃ PEDCQBHIVMGVHV-UHFFFAOYSA-N		Interactions Focus chain J [auth A] Focus chain M [auth G] Interactions & Density Focus chain J [auth A] Focus chain M [auth G]

Experimental Data & Validation

Experimental Data

Method: X-RAY DIFFRACTION
Resolution: 2.35 Å
R-Value Free: 0.238
R-Value Work: 0.201
R-Value Observed: 0.205
Space Group: P 6₅ 2 2

Unit Cell:

Length ( Å )	Angle ( ˚ )
a = 108.11	α = 90
b = 108.11	β = 90
c = 334.34	γ = 120

Software Package:

Software Name	Purpose
ADSC	data collection
PHENIX	model building
PHENIX	refinement
DENZO	data reduction
SCALEPACK	data scaling
PHENIX	phasing

Structure Validation

View Full Validation Report

Entry History

Deposition Data

Released Date: 2015-06-10

Deposition Author(s):

Pang, A.H.

Sawaya, M.R.

Yeates, T.O.

Revision History (Full details and data files)

Version 1.0: 2015-06-10
Type: Initial release
Version 1.1: 2023-09-20
Changes: Data collection, Database references, Derived calculations, Refinement description

Prepare Data

Validate Data

Deposit Data

Help and Resources

4QIE

Crystal Structure of PduA with edge mutation K26D

Crystal Structure of PduA with edge mutation K26D

Entity ID: 1

UniProt

Entity Groups

Sequence Annotations

Expand

Experimental Data

Structure Validation

Deposition Data

Revision History (Full details and data files)