Download MendeleyCrystal structure of an atmB (putative membrane lipoprotein) from Streptococcus mutans UA159 at 1.91 A resolution
Joint Center for Structural Genomics (JCSG)To be published.
4Q5T
Crystal structure of an atmB (putative membrane lipoprotein) from Streptococcus mutans UA159 at 1.91 A resolution
- PDB DOI: https://doi.org/10.2210/pdb4Q5T/pdb
- Classification: TRANSPORT PROTEIN
- Organism(s): Streptococcus mutans UA159
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-04-17 Released: 2014-06-18
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.230
- R-Value Work: 0.183
- R-Value Observed: 0.185
This is version 1.2 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Lipoprotein | 257 | Streptococcus mutans UA159 | Mutation(s): 0 Gene Names: atmB, SMU_1941 |  | |
UniProt | |||||
Find proteins for I6L927 (Streptococcus mutans serotype c (strain ATCC 700610 / UA159)) Explore I6L927 Go to UniProtKB: I6L927 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | I6L927 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 2 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| 2PE Query on 2PE | C [auth A], D [auth A], E [auth A] | NONAETHYLENE GLYCOL C18 H38 O10 YZUUTMGDONTGTN-UHFFFAOYSA-N |  | ||
| MSE Query on MSE | B [auth A] | SELENOMETHIONINE C5 H11 N O2 Se RJFAYQIBOAGBLC-BYPYZUCNSA-N |  | ||
| Modified Residues 1 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Type | Formula | 2D Diagram | Parent |
| MSE Query on MSE | A | L-PEPTIDE LINKING | C5 H11 N O2 Se | | MET |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.91 Å
- R-Value Free: 0.230
- R-Value Work: 0.183
- R-Value Observed: 0.185
- Space Group: C 2 2 21
- Diffraction Data: https://doi.org/10.18430/M34Q5T
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.021 | α = 90 |
| b = 106.053 | β = 90 |
| c = 95.22 | γ = 90 |
| Software Name | Purpose |
|---|---|
| MolProbity | model building |
| PDB_EXTRACT | data extraction |
| SHELX | phasing |
| SHARP | phasing |
| XSCALE | data scaling |
| PHENIX | refinement |
| XDS | data reduction |
| SHELXD | phasing |
Entry History
Deposition Data
- Released Date: 2014-06-18 Deposition Author(s): Joint Center for Structural Genomics (JCSG)
Revision History (Full details and data files)
- Version 1.0: 2014-06-18
Type: Initial release - Version 1.1: 2017-11-22
Changes: Refinement description - Version 1.2: 2023-02-01
Changes: Database references, Derived calculations
