Download MendeleyStructure of a Cu-Zn Superoxide dismutase at an evolutionary crossroad.
Subhadra, D., Anupama, A., Chirag, J., Ramaswamy, S., Sai Sudha, P.To be published.
4OJA
Structure of Hydra Cu-Zn superoxide dismutase
- PDB DOI: https://doi.org/10.2210/pdb4OJA/pdb
- Classification: OXIDOREDUCTASE
- Organism(s): Hydra vulgaris
- Expression System: Escherichia coli
- Mutation(s): No
- Deposited: 2014-01-21 Released: 2015-01-28
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 2.28 Å
- R-Value Free: 0.240
- R-Value Work: 0.191
- R-Value Observed: 0.196
wwPDB Validation 3D Report Full Report
This is version 1.1 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Superoxide dismutase [Cu-Zn] | 170 | Hydra vulgaris | Mutation(s): 0 Gene Names: SOD1, SodA EC: 1.15.1.1 |  | |
UniProt | |||||
Find proteins for I3V7W8 (Hydra vulgaris) Explore I3V7W8 Go to UniProtKB: I3V7W8 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | I3V7W8 | ||||
Sequence AnnotationsExpand | |||||
| |||||
Small Molecules
| Ligands 3 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| SO4 Query on SO4 | D [auth A] | SULFATE ION O4 S QAOWNCQODCNURD-UHFFFAOYSA-L |  | ||
| ZN Query on ZN | C [auth A] | ZINC ION Zn PTFCDOFLOPIGGS-UHFFFAOYSA-N |  | ||
| CU Query on CU | B [auth A] | COPPER (II) ION Cu JPVYNHNXODAKFH-UHFFFAOYSA-N |  | ||
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 2.28 Å
- R-Value Free: 0.240
- R-Value Work: 0.191
- R-Value Observed: 0.196
- Space Group: P 64 2 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 70.36 | α = 90 |
| b = 70.36 | β = 90 |
| c = 148.96 | γ = 120 |
| Software Name | Purpose |
|---|---|
| SCALA | data scaling |
| PHASER | phasing |
| PHENIX | refinement |
| PDB_EXTRACT | data extraction |
| PROCESS | data reduction |
Entry History
Deposition Data
- Released Date: 2015-01-28 Deposition Author(s): Anupama, A., Ramaswamy, S., Sai Sudha, P.
Revision History (Full details and data files)
- Version 1.0: 2015-01-28
Type: Initial release - Version 1.1: 2023-11-08
Changes: Data collection, Database references, Derived calculations, Refinement description
